Publications

See my google scholar page for a complete and up to date list.

Selected Publications

Statistical Methodology - Risk Prediction and High Dimensional Data Analysis

• Risk Classification with an Adaptive Naive Bayes Kernel Machine Model. Minnier J, Yuan M, Liu JS, Cai T. (2015). Journal of the American Statistical Association, 101(509); 393-404.
• A Perturbation Method for Inference on Regularized Regression Estimates. Minnier J, Tian L, Cai T. (2011). Journal of the American Statistical Association, 106(496), 1371-1382.

Genetic/Genomic/Proteomic

• The START App: A Web-Based RNAseq Analysis and Visualization Resource. Nelson J, Sklenar J, Barnes AP, Minnier J (2016). Bioinformatics, btw624. github STARTapp
• Extended Multiplexing of Tandem Mass Tags (TMT) Labeling Reveals Age and High Fat Diet Specific Proteome Changes in Mouse Epididymal Adipose Tissue. Plubell DL, Wilmarth PA, Zhao Y, Fenton AM, Minnier J, Reddy AP, Klimek J, Yang X, David LL, Pamir N. Molecular & Cellular Proteomics. 2017 May 1;16(5):873-90.
• Gene-environment interaction involving recently identified colorectal cancer susceptibility loci. Kantor ED, Hutter CM, Minnier J, Berndt SI, Brenner H, Caan BJ, Campbell TP, Carlson CS, Casey G, Chan AT, Chang-Claude J, Chanock SJ, Cotterchio M, Du M, Duggan D, Fuchs CS, Giovannuci EL, Gong J, Harrison TA, Hayes RB, Henderson BE, Hoffmeister M, Hopper JL, Jenkins MA, Jiao S, Kolonel LN, LeMarchand L, Lemire M, Ma J, Newcomb PA, Ochs-Balcom HM, Pflugeisen BM, Potter JD, Rudolph A, Schoen RE, Seminara D, Slattery ML, Stelling DL, Thomas F, Thornquist M, Ulrich CM, Warnick GS, Zanke BW, Hsu L, Peters U, White E. (2014). Cancer Epidemiology Biomarkers & Prevention, 23(9); 1824–33. PMCID24994789
• Assessing Population Level Genetic Instability via Moving Average. McDaniel S, Minnier J, Betensky RA, Mohapatra G, Shen Y, Gusella J, Louis D, Cai T (2010). Statistics in Biosciences, 2(2), 120-136.

Electronic Medical Records

• Validation of Electronic Health Record Phenotyping of Bipolar Disorder and Controls. Castro V, Minnier J, Murphy SN, Kohane I, Churchill S, Gainer V, Cai T, Dai Y, Block S, Nadal-Vicens M, Pollastri A, Rosenquist JN, Hirschberg A, Goryachev S, Sklar P, Perlis R, Smoller J. (2014). The American Journal of Psychiatry,172(4); 363-374. appi.ajp.2014.14030423.
• Using Electronic Medical Records to Enable Large-Scale Studies in Psychiatry: Treatment Resistant Depression as a Model. Perlis RH, Iosifescu DV, Castro VM, Murphy SN, Gainer VS, Minnier J, Cai T, Goryachev S, Zeng Q, Gallagher PJ, Fava M, Weilburg JB, Churchill SE, Kohane IS, Smoller JW. (2012). Psychological Medicine, 42(1), 41-50.

Cardiovascular

• Increased Coronary Tortuosity Is Associated with Increased Left Ventricular Longitudinal Myocardial Shortening. Oehler AC, Minnier J, Lindner JR. Journal of the American Society of Echocardiography. 30(10):1028-34.
• Threshold Effects of Circulating Angiopoietin-Like 3 Levels on Plasma Lipoproteins. Fazio S, Minnier J, Shapiro MD, Tsimikas S, Tarugi P, Averna MR, Arca M, Tavori H. (2017) The Journal of Clinical Endocrinology & Metabolism. 102(9):3340-8.
• PCSK9 association with lipoprotein (a). Tavori H, Christian D, Minnier J, Plubell D, Shaprio MD, Yeang C, Guinzioni I, Croyal M, Duell BP, Lambert G, Tsimikas S, Fazio S (2016). Circulation Research, 119:29-35.
• Elevated pulmonary capillary wedge pressure is associated with increased risk of ventricular arrhythmias in patients with left ventricular assist devices. (Abstract) Bensch J, Minnier J, Mai T, Davis J, Mudd JO, Gelow JM, Henrikson C, Chien CV (2016). Journal of Cardiac Failure, Volume 22, Issue 8, S13-S14
• Septal Myectomy Improves Symptoms More Than Alcohol Septal Ablation in Patients With Hypertrophic Obstructive Cardiomyopathy. (Abstract) Bensch J, Huebner M, Minnier J, Slater M, Cigarroa J, Heitner S (2016). Journal of the American College of Cardiology, Volume 67, Issue 13, Supplement, 1523.
• Efficacy of Clinical Notifications to Health Care Providers in Management of Heart Failure Patients. (Abstract) Akhavein R, Sklenar J, Minnier J, Heitner S (2015). Circulation. 2015;132:A18944.
• Global Longitudinal Strain and Segmental Strain Pattern as a Predictor of Outcome in Patients Undergoing Autologous Stem Cell Transplantation for Multiple Myeloma. (Abstract) Dawson K, Minnier J, Scott E, Heitner S (2015). Cardiology (Vol. 131, pp. 50-50)

Open Science and Reproducibility

• Reproducible and reusable research: Are journal data sharing policies meeting the mark? Vasilevsky NA, Minnier J, Haendel MA, Champieux R. (2017). PeerJ 5, e3208.

Ph.D. Dissertation

• Inference and Prediction for High Dimensional Data via Penalized Regression and Kernel Machine Methods. Minnier J (2012). Ph.D. Dissertation, Harvard University.