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Shiny Apps

See my github page for source code.

START - Shiny Transcriptome Analysis Tool

START app allows users to upload their gene (or protein, miRNA, etc) expression data and interactively explore and visualize the data and analysis results. It provides simple analysis pipelines as well as the ability to visualize already analyzed data.

Nelson J, Sklenar J, Barnes AP, Minnier J (2016). The START App: A Web-Based RNAseq Analysis and Visualization Resource. Bioinformatics, btw624.

Fellow Ranking

A shiny app to implement a fellow ranking/matching algorithm developed for OHSU Knight Cardiovascular Institute.